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Select" query failed when executing "COMPACT" and "CLEAN".

Posted by yixu2001 on Jan 17, 2018; 2:55am
URL: http://apache-carbondata-dev-mailing-list-archive.168.s1.nabble.com/Select-query-failed-when-executing-COMPACT-and-CLEAN-tp35402.html

dev


spark2.1+ carbondata1.1.1

"Select" query failed when executing "COMPACT" and "CLEAN".

After my cluster running for a period of time, there are so many fragments generated in it. Then I input the following 2 command.
"ALTER table  e_carbon.offer COMPACT 'MAJOR';"
"CLEAN FILES FOR TABLE e_carbon.offer;"

When the above 2 command are being executed, I execute a query statement in another shell such as:
"select offer_id,count(*) from e_carbon.offer group by offer_id having count(*)>1"

It failed with the following infomation:
"scala> cc.sql("select offer_id,count(*) from e_carbon.offer group by offer_id having count(*)>1").show;


[Stage 163:==================>                                   (60 + 9) / 173]18/01/16 16:38:17 WARN scheduler.TaskSetManager: Lost task 149.0 in stage 163.0 (TID 6854, HDD012, executor 106): org.apache.spark.util.TaskCompletionListenerException: java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: java.io.FileNotFoundException: File does not exist: /user/e_carbon/public/carbon.store/e_carbon/offer_inst_c/Fact/Part0/Segment_22.15/part-0-7_batchno0-0-1516091074114.carbondata
at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:71)
at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:61)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsInt(FSNamesystem.java:1828)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1799)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1712)
at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getBlockLocations(NameNodeRpcServer.java:652)
at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getBlockLocations(ClientNamenodeProtocolServerSideTranslatorPB.java:365)
at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:616)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:969)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2151)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2147)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:422)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1657)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2145)

at org.apache.spark.TaskContextImpl.markTaskCompleted(TaskContextImpl.scala:105)
at org.apache.spark.scheduler.Task.run(Task.scala:112)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:322)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)

18/01/16 16:38:17 WARN scheduler.TaskSetManager: Lost task 150.0 in stage 163.0 (TID 6855, HDD013, executor 95): org.apache.carbondata.core.datastore.exception.IndexBuilderException: Block B-tree loading failed
at org.apache.carbondata.core.datastore.BlockIndexStore.fillLoadedBlocks(BlockIndexStore.java:286)
at org.apache.carbondata.core.datastore.BlockIndexStore.getAll(BlockIndexStore.java:194)
at org.apache.carbondata.core.scan.executor.impl.AbstractQueryExecutor.initQuery(AbstractQueryExecutor.java:132)
at org.apache.carbondata.core.scan.executor.impl.AbstractQueryExecutor.getBlockExecutionInfos(AbstractQueryExecutor.java:187)
at org.apache.carbondata.core.scan.executor.impl.VectorDetailQueryExecutor.execute(VectorDetailQueryExecutor.java:36)
at org.apache.carbondata.spark.vectorreader.VectorizedCarbonRecordReader.initialize(VectorizedCarbonRecordReader.java:112)
at org.apache.carbondata.spark.rdd.CarbonScanRDD.compute(CarbonScanRDD.scala:213)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:96)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53)
at org.apache.spark.scheduler.Task.run(Task.scala:99)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:322)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.util.concurrent.ExecutionException: java.io.FileNotFoundException: File does not exist: /user/e_carbon/public/carbon.store/e_carbon/offer_inst_c/Fact/Part0/Segment_22.15/part-0-8_batchno0-0-1516091074114.carbondata
at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:71)
at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:61)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsInt(FSNamesystem.java:1828)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1799)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1712)
at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getBlockLocations(NameNodeRpcServer.java:652)
at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getBlockLocations(ClientNamenodeProtocolServerSideTranslatorPB.java:365)
at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:616)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:969)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2151)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2147)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:422)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1657)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2145)

at java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.util.concurrent.FutureTask.get(FutureTask.java:192)
at org.apache.carbondata.core.datastore.BlockIndexStore.fillLoadedBlocks(BlockIndexStore.java:271)
... 21 more
Caused by: java.io.FileNotFoundException: File does not exist: /user/e_carbon/public/carbon.store/e_carbon/offer_inst_c/Fact/Part0/Segment_22.15/part-0-8_batchno0-0-1516091074114.carbondata
at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:71)
at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:61)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsInt(FSNamesystem.java:1828)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1799)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1712)
at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getBlockLocations(NameNodeRpcServer.java:652)
at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getBlockLocations(ClientNamenodeProtocolServerSideTranslatorPB.java:365)
at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:616)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:969)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2151)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2147)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:422)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1657)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2145)

at sun.reflect.GeneratedConstructorAccessor29.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.hadoop.ipc.RemoteException.instantiateException(RemoteException.java:106)
at org.apache.hadoop.ipc.RemoteException.unwrapRemoteException(RemoteException.java:73)
at org.apache.hadoop.hdfs.DFSClient.callGetBlockLocations(DFSClient.java:1228)
at org.apache.hadoop.hdfs.DFSClient.getLocatedBlocks(DFSClient.java:1213)
at org.apache.hadoop.hdfs.DFSClient.getLocatedBlocks(DFSClient.java:1201)
at org.apache.hadoop.hdfs.DFSInputStream.fetchLocatedBlocksAndGetLastBlockLength(DFSInputStream.java:306)
at org.apache.hadoop.hdfs.DFSInputStream.openInfo(DFSInputStream.java:272)
at org.apache.hadoop.hdfs.DFSInputStream.<init>(DFSInputStream.java:264)
at org.apache.hadoop.hdfs.DFSClient.open(DFSClient.java:1526)
at org.apache.hadoop.hdfs.DistributedFileSystem$3.doCall(DistributedFileSystem.java:304)
at org.apache.hadoop.hdfs.DistributedFileSystem$3.doCall(DistributedFileSystem.java:299)
at org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81)
at org.apache.hadoop.hdfs.DistributedFileSystem.open(DistributedFileSystem.java:312)
at org.apache.carbondata.core.datastore.impl.FileFactory.getDataInputStream_(FileFactory.java:208)
at org.apache.carbondata.core.datastore.impl.FileFactory.getDataInputStream(FileFactory.java:180)
at org.apache.carbondata.core.reader.ThriftReader.open(ThriftReader.java:77)
at org.apache.carbondata.core.reader.CarbonHeaderReader.readHeader(CarbonHeaderReader.java:46)
at org.apache.carbondata.core.util.DataFileFooterConverterV3.readDataFileFooter(DataFileFooterConverterV3.java:53)
at org.apache.carbondata.core.util.CarbonUtil.readMetadatFile(CarbonUtil.java:1021)
at org.apache.carbondata.core.datastore.AbstractBlockIndexStoreCache.checkAndLoadTableBlocks(AbstractBlockIndexStoreCache.java:98)
at org.apache.carbondata.core.datastore.BlockIndexStore.loadBlock(BlockIndexStore.java:326)
at org.apache.carbondata.core.datastore.BlockIndexStore.get(BlockIndexStore.java:110)
at org.apache.carbondata.core.datastore.BlockIndexStore$BlockLoaderThread.call(BlockIndexStore.java:316)
at org.apache.carbondata.core.datastore.BlockIndexStore$BlockLoaderThread.call(BlockIndexStore.java:306)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
... 3 more
Caused by: org.apache.hadoop.ipc.RemoteException(java.io.FileNotFoundException): File does not exist: /user/e_carbon/public/carbon.store/e_carbon/offer_inst_c/Fact/Part0/Segment_22.15/part-0-8_batchno0-0-1516091074114.carbondata
at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:71)
at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:61)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsInt(FSNamesystem.java:1828)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1799)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1712)
at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getBlockLocations(NameNodeRpcServer.java:652)
at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getBlockLocations(ClientNamenodeProtocolServerSideTranslatorPB.java:365)
at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:616)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:969)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2151)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2147)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:422)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1657)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2145)

at org.apache.hadoop.ipc.Client.call(Client.java:1475)
at org.apache.hadoop.ipc.Client.call(Client.java:1412)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:229)
at com.sun.proxy.$Proxy17.getBlockLocations(Unknown Source)
at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.getBlockLocations(ClientNamenodeProtocolTranslatorPB.java:255)
at sun.reflect.GeneratedMethodAccessor11.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:191)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:102)
at com.sun.proxy.$Proxy18.getBlockLocations(Unknown Source)
at org.apache.hadoop.hdfs.DFSClient.callGetBlockLocations(DFSClient.java:1226)
... 25 more
 


yixu2001
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